Setubal J. Comparative Genomics. Methods and Protocols 2ed 2024 torrent

Textbook in PDF format

This second edition provides new and updated chapters covering computational and mathematical techniques and concepts related to the field of comparative genomics. The topics covered in the chapters range from those that address general techniques and concepts that apply to all organisms to others that are specialized and apply to specific biological systems such as viruses, bacteria, nematodes, and insects. Well-known comparative genomics web-based platforms are also covered in specific chapters. Written in the highly successful Methods in Molecular Biology series format, many chapters include introductions to their respective topics and step-by-step comparison procedures, demonstrated on actual sets of genome sequences.
Authoritative and cutting-edge, Comparative Genomics: Methods and Protocols, Second Edition aims to ensure successful results in the further study of this vital field.
Preface
Contributors
The Theory of Gene Family Histories
Protein-Coding Gene Families in Prokaryote Genome Comparisons
Family-Free Genome Comparison
Methods for Pangenomic Core Detection
Step-by-Step Bacterial Genome Comparison
How to Obtain and Compare Metagenome-Assembled Genomes
Comparative Genome Annotation
Annotation and Comparative Genomics of Prokaryotic Transposable Elements
Genome Rearrangement Analysis
AGO, a Framework for the Reconstruction of Ancestral Syntenies and Gene Orders
A Guide to Phylogenomic Inference
Comparative RNA Genomics
Bioinformatic Approaches for Comparative Analysis of Viruses
Comparative Analyses of Bacteriophage Genomes
Comparative Genomics of Sex, Chromosomes, and Sex Chromosomes in Caenorhabditis elegans and Other Nematodes
Comparative Evolutionary Genomics in Insects
Comparative Methods for Demystifying Spatial Transcriptomics
Comparative Genomic Analysis of Bacterial Data in BV-BRC: An Example Exploring Antimicrobial Resistance
VEuPathDB Resources: A Platform for Free Online Data Exploration, Integration, and Analysis
A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics an...
Index